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pp for 3D anatomy

Last-modified: 2015-09-07 (Mon) 06:38:41 (3155d)

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Suppose you have mprage01.fid (T1) and mprage02.fid (T2).

  • Monkey (coronal base)
    fid2sdt mprage01.fid
merge_coils mprage01
pp3d_tst mprage01-pw
raxis mprage01-pw-dT -3 1 -2 4
vmark mprage01-pw-dTX 6
sdt2spm mprage01-pw-dTX-MK6 flag
  flag = + (->.nii)
  flag = none (->analyze)

sdt2div mprage01-pw-dTX mprage02-pw-dTX
vmark mprage01-pw-dTX.t1t2 6
sdt2spm mprage01-pw-dTX.t1t2-MK6 flag
  flag = + (->.nii)
  flag = none (->analyze)
  • Monkey (sagittal base)
    fid2sdt mprage01.fid
merge_coils mprage01
pp3d_tst mprage01-pw
vmark mprage01-pw-dT 6
sdt2spm mprage01-pw-dT-MK6 flag
  flag = + (->.nii)
  flag = none (->analyze)

sdt2div mprage01-pw-dT mprage02-pw-dT
vmark mprage01-pw-dT.t1t2 6
sdt2spm mprage01-pw-dT.t1t2-MK6 flag
  flag = + (->.nii)
  flag = none (->analyze)